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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018664.1_12269_12643_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12269 - 12643
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGACTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
TGTTTCTTGACT
Flanking Amino Acid:
LEHLVKESLAEATFVPVSPR
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
80.6
0.69
0.9
73.8
35.8
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
82.1
1.09
1
91.69
30.7

Associated Gene:

Gene:
SCLY
Ensembl Gene ID:
ENSAPLG00000007985
Chromosome:
PEDO01018664.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008313
8411 - 13730
5320