Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018685.1_5299_5344_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5299 - 5344

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGA|GTAAGTGAG

5'SS Class:

major

3'SS Sequence:

CCGTGGGGGGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AAGTGAG

U12 Branch Point Sequence:

GCGATGGGGAGG

Flanking Amino Acid:

LKLKVYVRPTTALRGGLLAP

Intron Amino Acid Position:

145

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.59

1.1

40.1

Major BPS

46.3

-0.2

1.5

40.8

41.4

Major PPT

48.8

-0

1.2

41.2

Minor 5ss

33.3

-1.9

3.2

36.6

41.6

Minor BPS

24.3

-2.1

2.1

19.02

28.8

Associated Gene:

Gene:

EFNA2

Ensembl Gene ID:

ENSAPLG00000017394

Chromosome:

PEDO01018685.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047757

1283 - 5439

4157