Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018711.1_4049_4388_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4049 - 4388

Intron Length:

340

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATGCA

5'SS Class:

strong_major

3'SS Sequence:

CCTGTCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAAGAT

U12 Branch Point Sequence:

CTCTCCTGTCTT

Flanking Amino Acid:

AALRERLREKELHAAEVRRN

Intron Amino Acid Position:

176

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

77.4

30.7

Major BPS

59.6

0.24

1.1

55.4

40.4

Major PPT

82.1

0.72

0.8

76.1

32.4

Minor 5ss

32.3

-2

3.2

41.6

Minor BPS

37.9

-0.8

3.6

64.04

46.5

Associated Gene:

Gene:

STMN3

Ensembl Gene ID:

ENSAPLG00000012859

Chromosome:

PEDO01018711.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013385

3635 - 5928

2294