Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018727.1_2324_2575_F

Intron Information:

Intron Rank:

124290

Intron Class:

major

Intron Phase:

Intron Coordinates:

2324 - 2575

Intron Length:

252

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTAGA

5'SS Class:

strong_major

3'SS Sequence:

ATTGTTTTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAC

U12 Branch Point Sequence:

AGTGTTATAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

38.6

Major BPS

77.9

0.69

78.3

31.3

Major PPT

81.8

0.72

0.8

76.3

37.2

Minor 5ss

33.7

-1.9

42.3

44.5

Minor BPS

53.2

0.18

1.7

71.4

39.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017011

Chromosome:

PEDO01018727.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047881

1356 - 3340

1985