About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018748.1_912_1012_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
912 - 1012
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
CTTGCCCTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAC
U12 Branch Point Sequence:
GGGTGGTGACGT
Flanking Amino Acid:
KWSDRLPKCIPEAYEPCHNP
Intron Amino Acid Position:
809

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.3
50.9
47.3
Major BPS
56.2
0.15
1.3
48.8
46.3
Major PPT
75.7
0.58
0.8
69.2
31.3
Minor 5ss
30
-2.3
2.8
36.9
40.4
Minor BPS
32
-1.2
2.5
45.67
45.4

Associated Gene:

Gene:
SEZ6
Ensembl Gene ID:
ENSAPLG00000017483
Chromosome:
PEDO01018748.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030637
21 - 5307
5287
ENSAPLT00000030239
21 - 8581
8561