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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018759.1_7492_7568_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7492 - 7568
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTGCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTCTCTTCATCC
Flanking Amino Acid:
QYKECADPALDFLVEKDNEY
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
72.2
0.5
0.9
64.7
36.4
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
49.9
-0
1.8
61.83
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017390
Chromosome:
PEDO01018759.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033201
3917 - 9239
5323