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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018759.1_8210_8447_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8210 - 8447
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
GTGGCTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGAAAT
U12 Branch Point Sequence:
TGGAGCTGAAAT
Flanking Amino Acid:
VLELFDYAYEVIKHRLCRRG
Intron Amino Acid Position:
767

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
54.8
0.12
1.3
62.7
40.5
Major PPT
69
0.43
0.9
62.4
39.7
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
46.5
-0.1
2
64.06
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017390
Chromosome:
PEDO01018759.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033201
3917 - 9239
5323