Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018759.1_8553_8730_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8553 - 8730

Intron Length:

178

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAGTGCC

5'SS Class:

major

3'SS Sequence:

CTCTGCCCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCCCAT

U12 Branch Point Sequence:

AGCACCCCATCC

Flanking Amino Acid:

ALSMDDVKRHNPCESIRGHP

Intron Amino Acid Position:

802

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

1.3

74.6

37.4

Major BPS

50.9

0.02

1.3

60.4

37.5

Major PPT

0.49

0.8

65.4

30.5

Minor 5ss

35.3

-1.7

3.2

44.3

36.5

Minor BPS

40.6

-0.7

47.75

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017390

Chromosome:

PEDO01018759.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033201

3917 - 9239

5323