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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018766.1_841_1367_F

Intron Information:

Intron Rank:
135365
Intron Class:
major
Intron Phase:
Intron Coordinates:
841 - 1367
Intron Length:
527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGTGTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
87.9
0.85
0.8
85.4
34.1
Minor 5ss
36.8
-1.5
3.5
53.4
44.8
Minor BPS
54
0.2
1.7
71.36
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022838
Chromosome:
PEDO01018766.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018788
21 - 1872
1852