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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018775.1_1994_2970_R

Intron Information:

Intron Rank:
129775
Intron Class:
major
Intron Phase:
Intron Coordinates:
1994 - 2970
Intron Length:
977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
CCCTTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
ATTAACTGGAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
73.9
36.3
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
82
0.72
0.7
76.1
26
Minor 5ss
35.8
-1.6
2.9
53.8
42.8
Minor BPS
47.8
-0
1.8
69.72
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017010
Chromosome:
PEDO01018775.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033760
829 - 3333
2505