About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018789.1_4682_4781_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4682 - 4781
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGGGTGCT
5'SS Class:
major
3'SS Sequence:
CCGTCCCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCTAT
U12 Branch Point Sequence:
CTGTCCCTATCC
Flanking Amino Acid:
KWRLVNNGHTVMLSLEGEPA
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.1
65.8
40.2
Major BPS
56.2
0.15
1.3
54.7
42.5
Major PPT
75.8
0.58
0.8
69
31.5
Minor 5ss
28
-2.5
3.3
32.2
42.4
Minor BPS
53.1
0.08
2
66.82
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022416
Chromosome:
PEDO01018789.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045657
2723 - 7264
4542