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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018804.1_3266_3841_F

Intron Information:

Intron Rank:
136008
Intron Class:
major
Intron Phase:
Intron Coordinates:
3266 - 3841
Intron Length:
576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCATG
5'SS Class:
major
3'SS Sequence:
TTTCTCTTGCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
AGACACTCATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
70.5
41.3
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
82
0.72
0.9
77
37.2
Minor 5ss
37.7
-1.4
3
45.6
43.8
Minor BPS
43.1
-0.5
1.9
50.11
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023257
Chromosome:
PEDO01018804.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020862
1487 - 4221
2735