Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018810.1_830_1595_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

830 - 1595

Intron Length:

766

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGGGGG

5'SS Class:

major

3'SS Sequence:

GCCCCATGCCCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGCTGAG

U12 Branch Point Sequence:

TCTGCCCCACCA

Flanking Amino Acid:

LEEFETYQPGRCGRDTEDER

Intron Amino Acid Position:

190

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

1.1

60.1

42.1

Major BPS

47.4

-0.1

1.5

42.8

41.8

Major PPT

58.9

0.2

49.4

38.3

Minor 5ss

27.2

-2.6

3.7

37.3

47.4

Minor BPS

44.5

-0.4

2.2

59.96

45.8

Associated Gene:

Gene:

SEMA6B

Ensembl Gene ID:

ENSAPLG00000028933

Chromosome:

PEDO01018810.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045914

21 - 4315

4295

ENSAPLT00000044228

21 - 4315

4295

ENSAPLT00000028881

21 - 4315

4295