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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018827.1_3689_4077_R

Intron Information:

Intron Rank:
130486
Intron Class:
major
Intron Phase:
Intron Coordinates:
3689 - 4077
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGGCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.7
27.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.5
0.69
0.9
80.5
37
Minor 5ss
34.5
-1.8
3
40.8
39.4
Minor BPS
55.7
0.26
1.8
79.9
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017463
Chromosome:
PEDO01018827.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043786
2803 - 4464
1662