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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018828.1_1139_1863_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1139 - 1863

Intron Length:

725

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTTCC

5'SS Class:

strong_major

3'SS Sequence:

CGTGTCGGTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAG

U12 Branch Point Sequence:

CGGGGCTGAGCG

Flanking Amino Acid:

SLGMTESQVKVWFQNRRTKW

Intron Amino Acid Position:

197

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

75.8

Major BPS

43.9

-0.3

1.6

36.8

44.4

Major PPT

63.6

0.31

1.1

53.7

45.8

Minor 5ss

40.1

-1.1

53.2

44.1

Minor BPS

38.1

-1

36.44

45.2

Associated Gene:

Gene:

NKX6-2

Ensembl Gene ID:

ENSAPLG00000023491

Chromosome:

PEDO01018828.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024149

21 - 2728

2708