About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018828.1_641_965_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
641 - 965
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCGGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CCGTCTCTGACA
Flanking Amino Acid:
PWRDPRLACPAQTGMVLDKD
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
70.1
40.6
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
71.5
0.48
0.9
64.1
36.6
Minor 5ss
33.5
-1.9
3.1
42.5
44.2
Minor BPS
50
-0
1.7
58.23
42

Associated Gene:

Gene:
NKX6-2
Ensembl Gene ID:
ENSAPLG00000023491
Chromosome:
PEDO01018828.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024149
21 - 2728
2708