About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018844.1_427_652_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
427 - 652
Intron Length:
226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CCCCGTGCAGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCAGAC
U12 Branch Point Sequence:
TGCGCTCAGACC
Flanking Amino Acid:
LPGVLLLLLTAASVEELQIQ
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1
69.9
40.9
Major BPS
51.9
0.05
1
50
35.5
Major PPT
45.1
-0.2
1.6
46
35.3
Minor 5ss
34.4
-1.8
3
45.5
42.5
Minor BPS
41.9
-0.6
2
50.46
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029461
Chromosome:
PEDO01018844.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040841
72 - 692
621