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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018849.1_589_849_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
589 - 849
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
TGCTCTCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TTGTGCAGCACT
Flanking Amino Acid:
DHEDTREACLAASLALVLNG
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
60.2
39.4
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
73.1
0.52
0.8
65.6
36.1
Minor 5ss
31.7
-2.1
3.2
34
41.8
Minor BPS
43.2
-0.4
2.5
69.63
46.8

Associated Gene:

Gene:
PLPP5
Ensembl Gene ID:
ENSAPLG00000014221
Chromosome:
PEDO01018849.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014825
21 - 2255
2235