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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018856.1_2315_3545_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2315 - 3545
Intron Length:
1231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTTGTATA
5'SS Class:
major
3'SS Sequence:
TTTCTGCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
GTAACTGTAACA
Flanking Amino Acid:
RKEYSERRIIGYSMQEMYAV
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
71.8
39.4
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
85.6
0.8
0.8
77.2
37.1
Minor 5ss
41.3
-1
2.4
44.1
43.3
Minor BPS
51.8
0.05
2
65.73
40.5

Associated Gene:

Gene:
COQ10B
Ensembl Gene ID:
ENSAPLG00000004395
Chromosome:
PEDO01018856.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004515
1922 - 6517
4596