About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018901.1_1054_1166_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1054 - 1166
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCAACGG
5'SS Class:
major
3'SS Sequence:
TGTGCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAACCAT
U12 Branch Point Sequence:
CCCCCCAAAACC
Flanking Amino Acid:
TEKSPSATAKDSLFASQEKF
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.1
46.9
43.3
Major BPS
49.6
-0
1.3
58.8
37.4
Major PPT
69
0.43
0.9
58.8
38.3
Minor 5ss
24.2
-3
3.1
30.3
42.8
Minor BPS
45.5
-0.3
2
52.37
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026843
Chromosome:
PEDO01018901.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034739
60 - 1199
1140