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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018943.1_306_383_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
306 - 383
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CTGCACCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
ACCCCCTGCACC
Flanking Amino Acid:
GPFLLTNLLLDLLKASAPAR
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
40.2
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
65.7
0.35
0.9
58.2
32.7
Minor 5ss
27.1
-2.6
2.9
24.3
36.8
Minor BPS
47.2
-0.2
1.9
54.95
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031014
Chromosome:
PEDO01018943.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038483
91 - 1404
1314