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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018953.1_6010_6323_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6010 - 6323
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CCACTGTTAATT
Flanking Amino Acid:
CAEGEEPFKRGIIDYSFECK
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
78.3
30.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
85
0.79
0.7
80.4
25.1
Minor 5ss
34.5
-1.8
2.8
38.6
41.7
Minor BPS
47.6
-0.1
2
61.07
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021826
Chromosome:
PEDO01018953.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026086
3991 - 9408
5418