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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018965.1_450_935_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
450 - 935
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTCGT
5'SS Class:
major
3'SS Sequence:
TTACTCTGAGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCCGCATTT
Flanking Amino Acid:
VKVSVILDVQFPPNVTEDET
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
61.7
44.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
69.6
0.44
1
66.6
39.1
Minor 5ss
32.5
-2
3
42.1
44.5
Minor BPS
46.9
-0.1
2.4
72.99
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010207
Chromosome:
PEDO01018965.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010629
21 - 1141
1121