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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018991.1_447_1296_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
447 - 1296
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
GTGGGTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
TGGGGCTGACGG
Flanking Amino Acid:
MRRFQVVVSTTVNVD
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
62.5
0.28
1
54.5
41.4
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
35.2
-1.2
2.2
36.1
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022469
Chromosome:
PEDO01018991.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036099
21 - 1914
1894