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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019003.1_955_1639_R

Intron Information:

Intron Rank:
150164
Intron Class:
major
Intron Phase:
Intron Coordinates:
955 - 1639
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTGC
5'SS Class:
major
3'SS Sequence:
CTCCTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCGCAC
U12 Branch Point Sequence:
GGAGGCTGAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
67.7
38.4
Major BPS
49
-0
1.4
59.2
39.1
Major PPT
81.1
0.7
0.7
72.7
32.1
Minor 5ss
46.7
-0.3
2.5
62.1
42.5
Minor BPS
40.1
-0.6
2
51.31
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028376
Chromosome:
PEDO01019003.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040356
21 - 2374
2354