Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019027.1_2990_3066_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2990 - 3066

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

TGCTCTCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCCCAT

U12 Branch Point Sequence:

CGGGGCCCATCC

Flanking Amino Acid:

ELANCFRIFDKNADGFIDIE

Intron Amino Acid Position:

108

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

40.1

Major BPS

45.8

-0.2

1.5

52.1

45.2

Major PPT

0.56

0.8

69.4

31.3

Minor 5ss

28.4

-2.5

3.1

31.4

36.6

Minor BPS

32.3

-1.3

2.1

35.47

Associated Gene:

Gene:

TNNC2

Ensembl Gene ID:

ENSAPLG00000029922

Chromosome:

PEDO01019027.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027367

1699 - 5059

3361