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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019039.1_952_1319_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
952 - 1319
Intron Length:
368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TATTTTAACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTATTTTAACC
Flanking Amino Acid:
HRAGDWQCPNPGCGNQNFAW
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.38
1.3
66.2
39.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
70.3
0.46
0.9
64
41.5
Minor 5ss
33.4
-1.9
2.7
42.8
36.9
Minor BPS
77
0.83
1.1
82.48
30.8

Associated Gene:

Gene:
EWSR1
Ensembl Gene ID:
ENSAPLG00000025981
Chromosome:
PEDO01019039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025856
1 - 2134
2134