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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019049.1_269_1357_R

Intron Information:

Intron Rank:
152594
Intron Class:
major
Intron Phase:
Intron Coordinates:
269 - 1357
Intron Length:
1089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCAAT
U12 Branch Point Sequence:
TTTTTCCCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
59.5
0.24
1.3
68.4
35.9
Major PPT
85.9
0.81
0.7
81
24.3
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
48.2
-0.1
2.2
71.95
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029692
Chromosome:
PEDO01019049.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046706
200 - 3084
2885