Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019077.1_1373_1996_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1373 - 1996

Intron Length:

624

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGTCCA

5'SS Class:

strong_major

3'SS Sequence:

TGCCTGCACACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTCAC

U12 Branch Point Sequence:

CCTTCCGCATCT

Flanking Amino Acid:

LDELTADILGGLQVSQIKKV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

67.6

39.4

Major BPS

76.2

0.65

0.9

77.4

26.5

Major PPT

63.9

0.31

57.1

37.8

Minor 5ss

28.6

-2.5

2.7

25.4

36.3

Minor BPS

45.5

-0.2

2.4

67.57

48.9

Associated Gene:

Gene:

SARS1

Ensembl Gene ID:

ENSAPLG00000012511

Chromosome:

PEDO01019077.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013073

21 - 5200

5180