About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019077.1_2156_2746_F


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
2156 - 2746

Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTAGGGCCG

5'SS Class:
major

3'SS Sequence:
TGCCTTTGTGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
AGGTGAT

U12 Branch Point Sequence:
TGCCCCTTGCCT

Flanking Amino Acid:
HPSVPISNDEDVDNKVERVW

Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
76.7
0.63
1.1
57.9
46.7

Major BPS
57.3
0.18
1.3
48.8
46.3

Major PPT
76.6
0.6
0.9
72.1
37.9

Minor 5ss
29.7
-2.3
3.4
38.8
46.5

Minor BPS
45.4
-0.2
3.5
73.58
43.3

Associated Gene:

Gene:
SARS1

Ensembl Gene ID:

Chromosome:
PEDO01019077.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21 - 5200
5180