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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019077.1_3890_3972_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3890 - 3972
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAC
U12 Branch Point Sequence:
CAGGCCGGAGCT
Flanking Amino Acid:
GIFRVHQFEKIEQFVYASPH
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
71.2
34.5
Major BPS
57.5
0.19
1.1
48.8
38.1
Major PPT
78.6
0.64
0.8
73.3
31.6
Minor 5ss
24.3
-3
3.1
29.7
43.1
Minor BPS
39.7
-0.7
2.2
53.56
47.4

Associated Gene:

Gene:
SARS1
Ensembl Gene ID:
ENSAPLG00000012511
Chromosome:
PEDO01019077.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013073
21 - 5200
5180