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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019112.1_2453_3093_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2453 - 3093
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CGTGTGTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACACAA
U12 Branch Point Sequence:
GACCACACAACA
Flanking Amino Acid:
DSSLPSSSYTDLSQSSSPSL
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
49.3
-0
0.9
56.6
29.3
Major PPT
75.8
0.58
1
68.6
42
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
42.5
-0.5
1.9
49.9
39.9

Associated Gene:

Gene:
PPARD
Ensembl Gene ID:
ENSAPLG00000004751
Chromosome:
PEDO01019112.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004895
21 - 3327
3307