About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019112.1_37296_37404_R


Intron Information:

Intron Rank:
10

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
37296 - 37404

Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CCG|GTACGGGCA

5'SS Class:
major

3'SS Sequence:
AACCTTCCCCTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTAAC

U12 Branch Point Sequence:
TTTGTTTTAACC

Flanking Amino Acid:
VNADGTKTQPVTIVTSGAVV

Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
70.3
0.48
1.1
58.2
41

Major BPS
89.7
0.98
0.7
89.9
20

Major PPT
63.9
0.31
0.8
55.1
35.5

Minor 5ss
28.9
-2.4
3.6
38.8
46.5

Minor BPS
75.2
0.77
1.3
81.25
33.5

Associated Gene:

Gene:
ZNF76

Ensembl Gene ID:

Chromosome:
PEDO01019112.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

36716 - 42840
6125