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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019112.1_39149_39438_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39149 - 39438
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
ACCTCTGCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTAAA
U12 Branch Point Sequence:
TGCTCTGTGACC
Flanking Amino Acid:
NYKNHMRIHTGEKPYVCTVP
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
57.4
0.19
1.3
61.7
43.1
Major PPT
62.6
0.28
0.9
54.1
36
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
52.3
0.05
2.1
65.88
40.5

Associated Gene:

Gene:
ZNF76
Ensembl Gene ID:
ENSAPLG00000005226
Chromosome:
PEDO01019112.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005409
36716 - 42840
6125