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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019112.1_39619_39963_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39619 - 39963
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CTGCTCTGATCC
Flanking Amino Acid:
DLQKHIRTHTGERPFKCLFA
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
79
0.72
1
69
38.9
Major PPT
73
0.52
1
67
38.3
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
47.3
-0.2
1.7
56.04
42.4

Associated Gene:

Gene:
ZNF76
Ensembl Gene ID:
ENSAPLG00000005226
Chromosome:
PEDO01019112.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005409
36716 - 42840
6125