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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019112.1_41058_41455_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41058 - 41455
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGAATT
5'SS Class:
major
3'SS Sequence:
CATCTCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATTTCCTAATT
Flanking Amino Acid:
SEESSDVPSQELQEEEVHGS
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
77.2
37.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
72.8
0.51
1
69
36.7
Minor 5ss
40.9
-1
2.9
58.1
46.1
Minor BPS
65
0.55
1.6
80.12
35.4

Associated Gene:

Gene:
ZNF76
Ensembl Gene ID:
ENSAPLG00000005226
Chromosome:
PEDO01019112.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005409
36716 - 42840
6125