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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019112.1_42566_42707_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42566 - 42707
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTACATTTGATT
Flanking Amino Acid:
MVYIQNAPKENYDSSTFEA
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
83.1
0.74
0.7
76.9
25
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
57.3
0.31
1.5
74.12
36.6

Associated Gene:

Gene:
ZNF76
Ensembl Gene ID:
ENSAPLG00000005226
Chromosome:
PEDO01019112.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005409
36716 - 42840
6125