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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019112.1_535_842_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
535 - 842
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
CTTCTCTTTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
GGTTCCTGACCT
Flanking Amino Acid:
ILTGKASSTPQPFVIHDMDT
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
69.9
35.6
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
76.6
0.6
1
75
33.7
Minor 5ss
43.7
-0.7
2.7
59.7
38.5
Minor BPS
61.7
0.44
1.8
78.89
42.6

Associated Gene:

Gene:
PPARD
Ensembl Gene ID:
ENSAPLG00000004751
Chromosome:
PEDO01019112.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004895
21 - 3327
3307