Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019119.1_457_978_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

457 - 978

Intron Length:

522

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAACGAGC

5'SS Class:

major

3'SS Sequence:

ATGCGTTTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCTAAT

U12 Branch Point Sequence:

GTGCCCTGAATG

Flanking Amino Acid:

PVDAVKLGLPIPIHEFVEDI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.7

0.39

1.2

59.1

45.8

Major BPS

73.1

0.57

71.9

31.3

Major PPT

0.59

69.3

41.1

Minor 5ss

38.6

-1.3

3.2

52.3

44.7

Minor BPS

0.08

1.6

58.85

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019562

Chromosome:

PEDO01019119.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031309

21 - 1044

1024