Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019130.1_256_459_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

256 - 459

Intron Length:

204

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGCTCC

5'SS Class:

major

3'SS Sequence:

GGTCTCCTTCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCAACAC

U12 Branch Point Sequence:

CCCCCCCCAACA

Flanking Amino Acid:

QLPNRTHPEAPVGDESQARV

Intron Amino Acid Position:

204

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

63.2

38.2

Major BPS

44.5

-0.3

46.6

34.6

Major PPT

76.1

0.59

0.9

65.9

40.9

Minor 5ss

40.2

-1.1

2.9

52.1

44.7

Minor BPS

46.1

-0.3

1.9

53.63

44.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026358

Chromosome:

PEDO01019130.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021636

163 - 1810

1648

ENSAPLT00000036798

163 - 1810

1648