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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019160.1_24191_24238_F

Intron Information:

Intron Rank:
128208
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
24191 - 24238
Intron Length:
48

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCAGCCACA
5'SS Class:
weak_major
3'SS Sequence:
CAATAAATCCCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
AACTCAATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.3
0.2
1.4
56.1
42.7
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
59.4
0.21
1
48.2
43.2
Minor 5ss
33
-1.9
4.1
40.2
45.8
Minor BPS
48.4
-0
2
67.69
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019047
Chromosome:
PEDO01019160.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023872
23932 - 24543
612