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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019164.1_2179_2220_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2179 - 2220
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCCTCGACG
5'SS Class:
major
3'SS Sequence:
GTGGGGGCGGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACGTGAA
U12 Branch Point Sequence:
TCGACGTGAAGT
Flanking Amino Acid:
APDLNVNLKGEVGFEDLSGT
Intron Amino Acid Position:
960

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.3
56
43.2
Major BPS
50.7
0.02
1.2
43
39.5
Major PPT
48.7
-0
1.2
38.8
44.6
Minor 5ss
29.3
-2.4
3.9
40.9
45.2
Minor BPS
43.3
-0.4
2.4
61.09
48.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019169
Chromosome:
PEDO01019164.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047807
121 - 6385
6265