Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019164.1_250_1384_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

250 - 1384

Intron Length:

1135

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCGCGCCAC

5'SS Class:

major

3'SS Sequence:

GAGGGGGTTTGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGTTCAC

U12 Branch Point Sequence:

TTCTGTTCACCC

Flanking Amino Acid:

GKFSLFKSRKGESRQPGSGQ

Intron Amino Acid Position:

1225

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.8

0.61

1.1

57.7

43.9

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

42.9

-0.4

1.7

38.7

48.4

Minor 5ss

21.3

-3.3

3.9

42.8

Minor BPS

46.1

-0.3

2.2

61.68

44.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019169

Chromosome:

PEDO01019164.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047807

121 - 6385

6265