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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019164.1_2996_3160_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2996 - 3160
Intron Length:
165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTCAAAGGC
5'SS Class:
weak_major
3'SS Sequence:
GATGTTTGGGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGGTGAA
U12 Branch Point Sequence:
AGTCCCCCAAAG
Flanking Amino Acid:
MPKLHMSGPKISFPDVEFDL
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.8
0.11
1.3
51.3
38.7
Major BPS
47.8
-0.1
1.3
38.5
41.7
Major PPT
50.2
0
1.3
52.4
45.9
Minor 5ss
27.3
-2.6
3.3
33.3
35.8
Minor BPS
44.5
-0.5
2
51.4
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019169
Chromosome:
PEDO01019164.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033679
1100 - 6385
5286
ENSAPLT00000032234
782 - 6385
5604
ENSAPLT00000021609
1100 - 5950
4851
ENSAPLT00000037465
166 - 5950
5785