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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019164.1_696_3188_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
696 - 3188
Intron Length:
2493

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAT|GCCGAAACT
5'SS Class:
weak_major
3'SS Sequence:
AAACAACGACGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
ATAAAAATAAAT
Flanking Amino Acid:
SGKGKKSKFKMRWKKKKNTR
Intron Amino Acid Position:
915

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.1
0
1.3
60.1
37.8
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
39.3
-0.6
1.6
26.6
35.7
Minor 5ss
21.6
-3.3
3.9
36.8
40.3
Minor BPS
42.4
-0.5
2
61.66
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019169
Chromosome:
PEDO01019164.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029705
428 - 6385
5958