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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019165.1_10489_10949_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10489 - 10949
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TGGTCCCTCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAG
U12 Branch Point Sequence:
ACCTCCTTAGAG
Flanking Amino Acid:
ARGAASAEAHVVSFKEIWNR
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.1
42.1
Major BPS
54.9
0.12
1.6
53.6
43.8
Major PPT
72.3
0.5
0.9
65.8
35.9
Minor 5ss
34.6
-1.7
2.8
41
45.3
Minor BPS
52.1
-0
1.8
54.9
46

Associated Gene:

Gene:
PGF
Ensembl Gene ID:
ENSAPLG00000010094
Chromosome:
PEDO01019165.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010504
10187 - 14410
4224