Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019238.1_6294_6376_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6294 - 6376

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCTCC

5'SS Class:

strong_major

3'SS Sequence:

CTCTGCCCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAC

U12 Branch Point Sequence:

GGCCCCTGACCA

Flanking Amino Acid:

KLDAMTLIKEDMSIFGHCPA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.9

75.8

Major BPS

56.5

0.16

1.1

48.6

36.6

Major PPT

0.49

0.8

65.4

30.5

Minor 5ss

45.1

-0.5

2.8

44.7

Minor BPS

47.8

-0.1

1.8

55.58

42.7

Associated Gene:

Gene:

ATXN7L2

Ensembl Gene ID:

ENSAPLG00000024601

Chromosome:

PEDO01019238.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022293

6026 - 11047

5022

ENSAPLT00000020332

6026 - 11683

5658