Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019238.1_8355_8446_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8355 - 8446

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

TCCCCCTCCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAC

U12 Branch Point Sequence:

CGCCCCCCACCC

Flanking Amino Acid:

YAARPPRPQAFCTFGSRLVS

Intron Amino Acid Position:

447

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

75.2

37.4

Major BPS

56.5

0.16

1.1

48.6

36.6

Major PPT

73.3

0.52

0.7

64.8

30.7

Minor 5ss

38.8

-1.3

2.9

46.2

Minor BPS

39.9

-0.7

45.68

42.6

Associated Gene:

Gene:

ATXN7L2

Ensembl Gene ID:

ENSAPLG00000024601

Chromosome:

PEDO01019238.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022293

6026 - 11047

5022

ENSAPLT00000020332

6026 - 11683

5658