Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019243.1_805_1970_R

Intron Information:

Intron Rank:

131428

Intron Class:

major

Intron Phase:

Intron Coordinates:

805 - 1970

Intron Length:

1166

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGTAT

5'SS Class:

strong_major

3'SS Sequence:

TCCCTGTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTGTAAC

U12 Branch Point Sequence:

TTTAGTGTAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

0.9

32.3

Major BPS

56.8

0.17

1.4

61.4

43.2

Major PPT

81.2

0.7

0.8

75.5

32.9

Minor 5ss

37.8

-1.4

3.5

49.2

Minor BPS

50.3

0.09

2.4

80.13

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017914

Chromosome:

PEDO01019243.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048192

21 - 2921

2901