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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019260.1_853_997_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
853 - 997
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAC
U12 Branch Point Sequence:
TTTTTCTCCCCC
Flanking Amino Acid:
CEKCQGVVKPDIVFFGESLP
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
66.9
0.38
0.7
57.1
27.1
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
40.7
-0.7
3.6
69.77
42

Associated Gene:

Gene:
SIRT2
Ensembl Gene ID:
ENSAPLG00000017257
Chromosome:
PEDO01019260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022905
786 - 1966
1181